Looking at the nudibranch family myrrhinidae (Gastropoda, heterobranchia) from a mitochondrial ‘2d folding structure’ point of view

Integrative taxonomy is an evolving field of multidisciplinary studies often utilised to elucidate phylogenetic reconstructions that were poorly understood in the past. The systematics of many taxa have been resolved by combining data from different research approaches, i.e., molecular, ecological, behavioural, morphological and chemical. Regarding molecular analysis, there is currently a search for new genetic markers that could be diagnostic at different taxonomic levels and that can be added to the canonical ones. In marine Heterobranchia, the most widely used mitochondrial markers, COI and 16S, are usually analysed by comparing the primary sequence. The 16S rRNA molecule can be folded into a 2D secondary structure that has been poorly exploited in the past study of heterobranchs, despite 2D molecular analyses being sources of possible diagnostic characters. Comparison of the results from the phylogenetic analyses of a concatenated (the nuclear H3 and the mitochondrial COI and 16S markers) dataset (including 30 species belonging to eight accepted genera) and from the 2D folding structure analyses of the 16S rRNA from the type species of the genera investigated demonstrated the diagnostic power of this RNA molecule to reveal the systematics of four genera belonging to the family Myrrhinidae (Gastropoda, Heterobranchia). The “molecular morphological” approach to the 16S rRNA revealed to be a powerful tool to delimit at both species and genus taxonomic levels and to be a useful way of recovering information that is usually lost in phylogenetic analyses. While the validity of the genera Godiva, Hermissenda and Phyllodesmium are confirmed, a new genus is necessary and introduced for Dondice banyulensis, Nemesis gen. nov. and the monospecific genus Nanuca is here synonymised with Dondice, with Nanuca sebastiani transferred into Dondice as Dondice sebastiani comb. nov

DNA barcoding unveiling rare species: the case of Pruvotfolia pselliotes (Labbé, 1923) (Mollusca: Gastropoda: Nudibranchia) in the Mediterranean Sea

The Mediterranean Sea is a hot spot for marine biodiversity, and this is particularly evident taking into consideration the diversity observed in many animal groups, among them the Molluscs. In the last decade, several works have revealed a high rate of cryptic diversity characterizing the Molluscan fauna of the Mediterranean Sea and an increasing number of endemic and/or new species inhabiting this semi-enclosed basin have been recorded or described. The DNA-barcoding method is considered an essential step in the integrative taxonomy applications, to unravel cryptic diversity and for species identification. Here we report the case of DNA-barcoding technique applied to identify a nudibranch (Heterobranchia) collected from the Adriatic Sea, in the Bay of Kotor (Montenegro), for which a standard morphological identification was not possible. Mediterranean specimen belonging to Pruvotfolia pselliotes (Labbé, 1923) is for the first time molecularly identified and its COI DNA sequence compared with the one of an individual collected from the type locality. In addition, this is the first verified report of this species from the Adriatic Sea. Finally, the potential of using DNA-barcoding is here discussed, together with the habitat and the geographical distribution of this uncommon species

The southernmost record of Felimida elegantula (Philippi, 1844) (Gastropoda: Nudibranchia)

The southernmost record of the Mediterranean nudibranch Felimida elegantula (Philippi, 1844) is reported here. A single specimen, with a colour pattern that hampered an easy morphological identification, was collected at the Kerkennah Islands (Tunisia). DNA-barcoding analysis (with the cytochrome c oxidase subunit I genetic marker) unambiguously confirmed its identification, and radular and anatomical features conformed with those previously described. With this record, the chromatic polymorphism of F. elegantula is demonstrated to be extremely large and the known range of the species is extended to the African coast of Tunisia

Molecular detection of parasites (Trematoda, Digenea: Bucephalidae and Monorchiidae) in the European flat oyster Ostrea edulis (Mollusca: Bivalvia)

Members of the globally distributed bivalve family Ostreidae (oysters) have a significant role in marine ecosystems and include species of high economic importance. In this work, we report the occurrence of digenean parasites of the families Bucephalidae (Prosorhynchoides sp.) and Monorchiidae (Postmonorchis sp.) in Mediterranean native populations of Ostrea edulis (but not in the introduced Magallana gigas). Molecular detection was based on DNA sequencing of the ribosomal intergenic spacer 2 (ITS2) marker. The importance of detecting the presence of overlooked digenean parasites in Mediterranean oysters is discussed. © 2018 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group

A multilocus view on Mediterranean aeolid nudibranchs (Mollusca): Systematics and cryptic diversity of Flabellinidae and Piseinotecidae

Recent molecular studies revealed high level of endemism and numerous cryptic species within opisthobranchs, with Mediterranean taxa clearly understudied. Here we used genetic data from both mitochondrial and nuclear gene fragments as well as morphological data from taxonomically relevant characters to investigate the phylogenetic relationships and systematics of Mediterranean taxa of the Flabellinidae and Piseinotecidae families. Phylogenetic analyses based on Bayesian and Maximum-Likelihood methods indicate that Flabellinidae and Pisenotecidae taxa and species within the genera Flabellina, Calmella and Piseinotecus do not form monophyletic clades. These results are supported by our morphological analyses which allowed the re-evaluation of the triseriate radula condition in Pisenotecidae and Calmella taxa and their inclusion in the genus Flabellina as Flabellina gaditana comb. nov. (synonym of F. confusa), Flabellina gabinierei comb. nov. and Flabellina cavolini comb. nov. Species delimitation and barcoding gap analyses allowed uncovering cryptic species within Flabellina gracilis (Alder and Hancock, 1844), F. trophina (Bergh, 1890), F. verrucosa (M. Sars, 1829) and F. ischitana Hirano and Thompson, 1990, the latter with an Atlantic form which is under description. This study corroborates the relevance of combining molecular and morphological data from multiple populations and species in the assessment of nudibranch diversity and classification

Thermo-programmed synthetic DNA-based receptors

Herein, we present a generalizable and versatile strategy to engineer synthetic DNA ligand-binding devices that can be programmed to load and release a specific ligand at a defined temperature. We do so by re-engineering two model DNA-based receptors: a triplex-forming bivalent DNA-based receptor that recognizes a specific DNA sequence and an ATP-binding aptamer. The temperature at which these receptors load/release their ligands can be finely modulated by controlling the entropy associated with the linker connecting the two ligand-binding domains. The availability of a set of receptors with tunable and reversible temperature dependence allows achieving complex load/release behavior such as sustained ligand release over a wide temperature range. Similar programmable thermo-responsive synthetic ligand-binding devices can be of utility in applications such as drug delivery and production of smart materials

Six DOF Motion Estimation for Teleoperated Flexible Endoscopes Using Optical Flow: A Comparative Study

Colorectal cancer is one of the leading causes of cancer-related deaths worldwide, although it can be effectively treated if detected early. Teleoperated flexible endoscopes are an emerging technology to promote participation in these preventive screenings. Real-time pose estimation is therefore essential to enable feedback to the robotic endoscope's control system. Vision-based endoscope localization approaches are a promising avenue, since they do not require extra sensors on board the endoscopes. In this work, we compare several state-of-the-art algorithms for computing the image motion (optical flow), which is then used with a supervised learning strategy to provide an accurate estimate of the 6 degree of freedom endoscope motion. The method is validated using a robotically actuated endoscope in a human colon simulator, and represents a preliminary effort towards testing with clinical video data

Two seas for one great diversity: Checklist of the marine heterobranchia (Mollusca; Gastropoda) from the Salento Peninsula (South-East Italy)

The Salento peninsula is a portion of the Italian mainland separating two distinct Mediterranean basins, the Ionian and the Adriatic seas. Several authors have studied the marine Heterobranchia (Mollusca, Gastropoda) fauna composition living in the Ionian Sea, but to date further knowledge regarding this interesting group of mollusks is still needed. Recent studies have corroborated the peculiarity of the Mediterranean Sea showing high levels of endemism and cryptic diversity. On the other hand, marine sea slugs have been revealed to be important indicators of the marine ecosystem's health, due to their species-specific diet that consist of a vast variety of sessile and benthic invertebrates. A baseline study of the marine Heterobranchia diversity is therefore a necessary step to reveal the hidden diversity and to monitor the possible presence of alien species. The present study shows results from approximately 600 scientific dives carried out during a nine-year period in all of the main submarine habitats of the studied area, while accounting for the marine Heterobranchia from both the Ionian and Adriatic Seas. With this contribution, the list of marine Heterobranchia inhabiting the Salento Peninsula rises to 160. Furthermore, it also reports, for the first time, the presence of one alien species and three new records for Italian waters. Ecological notes and geographical distribution for each added species are provided together with animal iconography, consisting mainly of in situ photographs, for species identification

Ecological notes of the alien species godiva quadricolor (Gastropoda: Nudibranchia) occurring in Faro lake (Italy)

The first record from Sicily of the introduced facelinid nudibranch Godiva quadricolor allowed the detection of trophic relationships with the polycerid Polycera hedgpethi, another non-native nudibranch, and with two bryozoan species, namely the naturalized Cheilostomatida Bugula neritina and the cryptogenic Ctenostomatida Amathia verticillata. The settlement of both nudibranchs was presumably promoted by a trophic shift of P. hedgpethi from the natural prey B. neritina towards the largely available and not exploited A. verticillata. This short food web, without evident links with native fauna and having G. quadricolor as the top predator, is described. A DNA barcoding approach was used to confirm the identity of this facelinid species and to explore the possible genetic divergence occurring among the samples analysed

Phenotypic diversity of Thuridilla hopei (Verany, 1853) (Gastropoda Heterobranchia Sacoglossa). A DNA-barcoding approach

The sacoglossan Thuridilla hopei (Verany, 1853) shows highly diverse chromatic patterns. Based on the morphological examination of specimens from different Mediterranean localities, we have observed that in spite of this great variability in colours of T. hopei, two major chromatic morphotypes are related to bathymetry. Specimens from deeper water exhibit blue darker and more uniform patterns than individuals from shallower water, which show a more variable, dashed and spotted arrangement of light blue, yellow, orange, white and black pigmentation. A molecular genetic analysis using the mitochondrial COI and 16S rDNA markers has confirmed that all these extremely different chromatic morphotypes belong to a single specific entity, i.e. T. hopei, a sacoglossan with a wide distribution, from Macaronesia in the Atlantic, to the easternmost Mediterranean Sea